P1299 on Lincoln: How to Diagnose & Fix
Cylinder Head Over-Temperature Protection Active (manufacturer-specific, Ford)
1 Lincoln model · 1 documented issue · 1 critical · $600-$9,000 repair
P1299 on Lincoln by model: symptoms, diagnosis and fix
2019-2020 Nautilus models with the base 2.0L EcoBoost (non-hybrid) suffer unexplained coolant loss, white tailpipe smoke, an overheat warning, and sometimes coolant intrusion into the cylinders. Ford TSB 20-2234 traces the most common cause to a failing exhaust gas recirculation (EGR) cooler that leaks coolant internally; the related design also has a known coolant-intrusion weakness (narrow coolant slit between cylinders compromising the head-gasket seal). Owners report repeated coolant top-offs with no visible external leak, then misfires as coolant fouls the plugs. A June 2025 Ford EcoBoost coolant-intrusion class action covers 1.5L-2.0L engines; the most severe Nautilus cases require engine replacement with the redesigned block.
Common Symptoms
- Repeated low-coolant warnings / disappearing coolant with no visible leak
- White smoke from the tailpipe (especially on cold start)
- Engine overheating / over-temperature warning in cluster
- Sweet coolant smell inside or outside the vehicle
- Rough idle and misfires (coolant-fouled plugs)
- Check engine light
How to Fix
Per TSB 20-2234, perform a cooling-system pressure test and inspect the EGR cooler; replace the EGR cooler and update PCM software for the typical case. If a coolant smell, white smoke, and cylinder misfires persist (coolant intrusion past the head gasket), the durable fix is a long-block / engine replacement with the updated cross-drilled block — a head-gasket-only repair on the old-style block will fail again. Replace fouled spark plugs and flush the cooling system.
What you need to fix it
Only diagnosis- and fitment-reviewed repair parts are linked here.
- Genuine Ford K2GZ-9F464-B EGR coolerOEMK2GZ-9F464-B
Replace a cooling-system-pressure-test-confirmed internally leaking EGR cooler under the matching TSB branch Fitment/availability: Live Ships in 1-3 Business Days/Add to Cart page identifies K2GZ-9F464-B, replacement of K2GZ-9F464-A and …
- Genuine Lincoln CYFS-12Y-PCTX / Motorcraft SP-550X spark plugOEMCYFS-12Y-PCTX / SP-550X
Confirm VIN
- Motorcraft Yellow prediluted antifreeze/coolant VC-13DL-G, 1 gallonOEMVC-13DL-G
Refill and bleed the repaired system with Ford-approved service coolant after the leak is corrected Fitment/availability: Live In Stock/Add to Cart direct page identifies Motorcraft VC-13DL-G one-gallon yellow prediluted coolant. Ford ap…
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Sources for this issue (3)
P1299 code reference
General diagnostic-code context. The code alone does not confirm a cause for your vehicle; use the applicable issue card and its sources.
Frequently asked questions
What does P1299 mean on a Lincoln?
P1299 stands for "Cylinder Head Over-Temperature Protection Active (manufacturer-specific, Ford)." P1299 is a manufacturer-specific powertrain code, most commonly on Ford, indicating that the Cylinder Head Temperature (CHT) sensor detected an engine overheating condition and the computer has activated a fail-safe cooling strategy to protect the engine. The PCM may reduce power and shut off fuel to some cylinders to limit heat, often putting the vehicle in a limited 'limp' mode. This means the engine is running too hot and continued driving risks serious engine damage, so the vehicle should be stopped and cooled as soon as it is safe. On Lincoln it is documented across 1 model: Nautilus.
What are the most common causes of P1299?
The most common causes of P1299 are: Low coolant level or coolant loss/leak, Stuck-closed thermostat, Failed water pump, Cooling fan not operating, Faulty cylinder head temperature (CHT) sensor, Blocked radiator or restricted coolant flow, Head gasket failure or air in the cooling system. The specific cause varies by vehicle.
How much does it cost to fix P1299 on a Lincoln?
Published repair estimates on Lincoln range from $600 to $9,000 depending on the model and root cause. If an issue mentions a recall or campaign, check your VIN with the manufacturer or NHTSA and confirm eligibility and coverage with a dealer.
Looking for P1299 on a different make?
View P1299 across all makes →Content compiled with AI assistance using NHTSA complaints, TSBs, and owner reports. May contain errors. Always verify with your vehicle's service manual.